>>> Synchronization of repository 'gentoo' located in '/var/db/repositories/funtoo'...
>>> '/var/db/repositories/funtoo' not found, creating it.fatal: Not a git repository (or any of the parent directories): .git
>>> Cloning git repository from upstream into /var/db/repositories/funtoo...

Notice, that i set portage tree to /var/db/repositories/funtoo. During initial clone it prints above message, which misleading and not giving clear info. When tree not exist yet, it should print something like:
1. portage tree not exist, cloning
2. successfully created and synced portage tree
No fatal or other messages.