* Package: dev-python/mpi4py-1.3.1-r1000 * Repository: gentoo * USE: amd64 elibc_glibc kernel_linux python_abis_2.7 python_abis_3.3 userland_GNU * FEATURES: preserve-libs sandbox splitdebug >>> Unpacking source... >>> Unpacking mpi4py-1.3.1.tar.gz to /var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/work >>> Source unpacked in /var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/work >>> Preparing source in /var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/work/mpi4py-1.3.1 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/work/mpi4py-1.3.1 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/work/mpi4py-1.3.1 ... * Building of dev-python/mpi4py-1.3.1-r1000 with CPython 2.7... python2.7 setup.py build -b build-2.7 running build running build_src running build_py creating build-2.7 creating build-2.7/lib.linux-x86_64-2.7 creating build-2.7/lib.linux-x86_64-2.7/mpi4py copying src/rc.py -> build-2.7/lib.linux-x86_64-2.7/mpi4py copying src/__init__.py -> build-2.7/lib.linux-x86_64-2.7/mpi4py creating build-2.7/lib.linux-x86_64-2.7/mpi4py/include creating build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.MPI_api.h -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.MPI.h -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.h -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/MPI.pxd -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi_c.pxd -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/__init__.pxd -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/__init__.pyx -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi.pxi -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.i -> build-2.7/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/MPI.pxd -> build-2.7/lib.linux-x86_64-2.7/mpi4py copying src/mpi_c.pxd -> build-2.7/lib.linux-x86_64-2.7/mpi4py warning: build_py: byte-compiling is disabled, skipping. running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/bin/mpicc MPI C++ compiler: /usr/bin/mpicxx MPI F77 compiler: /usr/bin/mpif77 MPI F90 compiler: /usr/bin/mpif90 checking for library 'pthread' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -lpthread -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for library 'mpe' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -lmpe -lpthread -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'lmpe' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -llmpe -lpthread -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -llmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build-2.7/temp.linux-x86_64-2.7 creating build-2.7/temp.linux-x86_64-2.7/src /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c src/pmpi-mpe.c -o build-2.7/temp.linux-x86_64-2.7/src/pmpi-mpe.o creating build-2.7/lib.linux-x86_64-2.7/mpi4py/lib-pmpi /usr/bin/mpicc x86_64-pc-linux-gnu-gcc -pthread -shared -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed build-2.7/temp.linux-x86_64-2.7/src/pmpi-mpe.o -o build-2.7/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libmpe.so x86_64-pc-linux-gnu-gcc: error: x86_64-pc-linux-gnu-gcc: No such file or directory warning: build_clib: building library "mpe" failed warning: build_clib: command '/usr/bin/mpicc' failed with exit status 1 checking for library 'vt-mpi' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -lvt-mpi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -lvt.mpi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt' dylib library /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c src/pmpi-vt.c -o build-2.7/temp.linux-x86_64-2.7/src/pmpi-vt.o /usr/bin/mpicc x86_64-pc-linux-gnu-gcc -pthread -shared -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed build-2.7/temp.linux-x86_64-2.7/src/pmpi-vt.o -o build-2.7/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt.so x86_64-pc-linux-gnu-gcc: error: x86_64-pc-linux-gnu-gcc: No such file or directory warning: build_clib: building library "vt" failed warning: build_clib: command '/usr/bin/mpicc' failed with exit status 1 checking for library 'vt-mpi' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -lvt-mpi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c src/pmpi-vt-mpi.c -o build-2.7/temp.linux-x86_64-2.7/src/pmpi-vt-mpi.o /usr/bin/mpicc x86_64-pc-linux-gnu-gcc -pthread -shared -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed build-2.7/temp.linux-x86_64-2.7/src/pmpi-vt-mpi.o -o build-2.7/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-mpi.so x86_64-pc-linux-gnu-gcc: error: x86_64-pc-linux-gnu-gcc: No such file or directory warning: build_clib: building library "vt-mpi" failed warning: build_clib: command '/usr/bin/mpicc' failed with exit status 1 checking for library 'vt-hyb' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -lvt-hyb -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt-hyb collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -c src/pmpi-vt-hyb.c -o build-2.7/temp.linux-x86_64-2.7/src/pmpi-vt-hyb.o /usr/bin/mpicc x86_64-pc-linux-gnu-gcc -pthread -shared -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed build-2.7/temp.linux-x86_64-2.7/src/pmpi-vt-hyb.o -o build-2.7/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-hyb.so x86_64-pc-linux-gnu-gcc: error: x86_64-pc-linux-gnu-gcc: No such file or directory warning: build_clib: building library "vt-hyb" failed warning: build_clib: command '/usr/bin/mpicc' failed with exit status 1 running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/bin/mpicc MPI C++ compiler: /usr/bin/mpicxx MPI F77 compiler: /usr/bin/mpif77 MPI F90 compiler: /usr/bin/mpif90 checking for MPI compile and link ... checking for header 'mpi.h' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -Lbuild-2.7/temp.linux-x86_64-2.7 -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for missing MPI functions/symbols ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o checking for function 'MPI_Type_create_f90_integer' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -Lbuild-2.7/temp.linux-x86_64-2.7 -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Type_create_f90_real' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -Lbuild-2.7/temp.linux-x86_64-2.7 -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Type_create_f90_complex' ... /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c _configtest.c -o _configtest.o /usr/bin/mpicc -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed _configtest.o -Lbuild-2.7/temp.linux-x86_64-2.7 -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.MPI' extension /usr/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -march=corei7 -O2 -pipe -I/usr/include/python2.7 -c src/MPI.c -o build-2.7/temp.linux-x86_64-2.7/src/MPI.o In file included from src/MPI.c:3:0: src/mpi4py.MPI.c: In function ‘initMPI’: src/mpi4py.MPI.c:107349:3: warning: ‘ompi_mpi_ub’ is deprecated (declared at /usr/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations] __pyx_t_3 = ((PyObject *)__pyx_f_6mpi4py_3MPI_new_Datatype(MPI_UB)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[18]; __pyx_lineno ^ src/mpi4py.MPI.c:107364:3: warning: ‘ompi_mpi_lb’ is deprecated (declared at /usr/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations] __pyx_t_3 = ((PyObject *)__pyx_f_6mpi4py_3MPI_new_Datatype(MPI_LB)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[18]; __pyx_lineno ^ /usr/bin/mpicc x86_64-pc-linux-gnu-gcc -pthread -shared -march=corei7 -O2 -pipe -march=corei7 -O2 -pipe -Wl,-O1 -Wl,--sort-common -Wl,--as-needed build-2.7/temp.linux-x86_64-2.7/src/MPI.o -Lbuild-2.7/temp.linux-x86_64-2.7 -lpython2.7 -o build-2.7/lib.linux-x86_64-2.7/mpi4py/MPI.so x86_64-pc-linux-gnu-gcc: error: x86_64-pc-linux-gnu-gcc: No such file or directory error: command '/usr/bin/mpicc' failed with exit status 1 * ERROR: dev-python/mpi4py-1.3.1-r1000 failed (compile phase): * Building failed with CPython 2.7 in distutils_building() function * * Call stack: * ebuild.sh, line 93: Called src_compile * environment, line 3815: Called distutils_src_compile * environment, line 1181: Called python_execute_function 'distutils_building' * environment, line 1923: Called die * The specific snippet of code: * die "${_python[failure_message]}"; * * If you need support, post the output of `emerge --info '=dev-python/mpi4py-1.3.1-r1000'`, * the complete build log and the output of `emerge -pqv '=dev-python/mpi4py-1.3.1-r1000'`. * The complete build log is located at '/var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/work/mpi4py-1.3.1' * S: '/var/tmp/portage/dev-python/mpi4py-1.3.1-r1000/work/mpi4py-1.3.1'